FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556702
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45480.8169541334502121No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23070.41440483418417756No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19280.3463253230633265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17110.30734576128700813No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11070.19884965385430622No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10940.19651447273406597No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10720.19256262776135166No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG10650.19130522254276075No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9960.17891079967379317No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9780.1756774719688451No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9520.17100710972836455No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC9190.16507934226929308No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9070.16292379046599437No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8270.14855344511066962No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8270.14855344511066962No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7770.13957197926359163No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7260.13041088409957213No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6890.12376459937273443No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6300.11316646967318242No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6280.1128072110392993No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5940.10669981426328627No Hit

[OK]Adapter Content

Adapter graph