FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542521
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20270.37362609004997044No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19520.3598017403934594No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17280.31851301608601323No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14320.2639529161083165No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC9960.183587363438466No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9770.18008519485881652No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9440.1740024810099517No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9380.1728965330374308No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9340.17215923438908357No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8280.15262082020788137No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC8250.15206784622162092No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7800.1437732364277143No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7260.1338197046750264No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7060.13013321143329012No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG6710.12368184826025168No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6180.11391264116965058No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5760.10617100536200441No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5630.10377478475487585No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5570.10266883678235496No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)