FastQCFastQC Report
Sun 21 May 2023
EGAF00007958877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542521
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51660.9522212043404772No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43610.8038398513605925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20780.3830266478163979No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18890.3481892866819902No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17050.31427354885801656No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG10430.1922506225565462No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10340.19059170059776487No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10050.18524628539724727No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9760.1799008701967297No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9130.1682884164852605No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8740.16109975466387477No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8180.15077757358701321No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8110.14948730095240553No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8000.1474597296694506No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7350.13547862663380772No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7150.13179213339207146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6760.12460347157068576No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6260.11538723846634509No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5900.1087515506312198No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5500.10137856414774728No Hit

[OK]Adapter Content

Adapter graph