FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559670
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21140.37772258652420176No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20800.37164757803705756No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18400.32876516518662785No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14960.26730037343434526No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10820.19332821126735397No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10450.1867171726195794No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC10380.18546643557810855No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC10050.17957010381117444No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9540.17045759108045813No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC8880.15866492754658995No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8790.15705683706469883No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8450.15098182857755463No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8000.14294137616809907No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7450.13311415655654224No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7110.12703914806939803No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7020.12543105758750692No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6140.10970750620901604No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5900.10541926492397306No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5890.10524058820376293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)