FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559670
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46830.8367430807440098No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22890.4089910125609734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20330.36324977218718174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17980.32126074293780266No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11430.20422749120017153No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG10990.19636571551092608No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10980.19618703879071597No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10980.19618703879071597No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10700.1911840906248325No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9470.16920685403898725No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9440.16867082387835688No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC9010.16098772490932156No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8740.1561634534636482No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8300.14830167777440278No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7950.14204799256704845No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA7900.14115460896599782No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7580.13543695391927388No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7370.13168474279486125No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6150.10988618292922617No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6060.10827809244733502No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5610.10023764003787947No Hit

[OK]Adapter Content

Adapter graph