FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548363
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25360.46246738018429395No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23690.43201310081095917No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20180.36800440584065663No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19160.34940358849885933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18920.34502692559490705No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14010.25548769701821605No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13310.2427224302150218No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11080.2020559373991316No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10990.20041468881014948No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10600.19330261159122697No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10530.19202608491090756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10390.18947303155026873No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10250.18691997818962985No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10070.18363748101166563No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9520.1736076285234416No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8660.15792458645094581No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8320.15172431400368006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.13440002334220214No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7180.13093516520990658No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7010.1278350289862737No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6980.12728794612327965No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6770.12345836608232139No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6720.12254656131066465No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6490.11835225936104368No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6240.11379323550276003No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6010.10959893355313907No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5910.1077753240098256No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5880.10722824114683158No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5700.10394574396886734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)