FastQCFastQC Report
Wed 31 May 2023
EGAF00007958885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530600
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48090.9063324538258576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23340.43987938183188846No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20910.39408217112702604No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20790.391820580474934No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18810.35450433471541654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16460.31021485111194874No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13210.2489634376177912No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12520.23595929136826232No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10710.20184696569920846No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10580.19939690915944214No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10360.19525065963060687No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10330.19468526196758387No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9780.18431963814549568No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9050.1705616283452695No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8630.16264606106294763No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8230.15510742555597437No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7990.15058424425179043No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7430.14003015454202788No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7230.13626083678854126No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6870.12947606483226537No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6160.11609498680738788No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6120.11534112325669055No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6100.11496419148134186No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5890.11100640784018094No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5740.10817941952506596No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5740.10817941952506596No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5740.10817941952506596No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5590.105352431209951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)