FastQCFastQC Report
Sun 21 May 2023
EGAF00007958898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498012
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12720.25541553215585167No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12300.24698200043372448No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11130.22348859063637022No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7840.15742592547970732No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7570.15200436937262557No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6360.12770776607792583No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5820.11686465386376232No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5290.10622234002393516No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5080.10200557416287159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)