FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498012
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14660.29437041677710574No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12810.2572227175248789No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12560.25220275816646986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9540.19156164911688875No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8840.17750576291334347No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8430.16927302956555265No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8410.1688714328168799No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6610.13272772543633488No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6270.1259005807088986No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5500.11043910588499875No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5440.10923431563898058No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5220.10481675140358064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)