FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482699
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12340.25564585797774597No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11700.24238707766123402No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10910.22602077070803958No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7200.1491612785607594No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6840.14170321463272142No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6310.13072328718310997No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5800.1201576966183895No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5680.11767167530904353No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5120.10607024253209557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)