FastQCFastQC Report
Wed 31 May 2023
EGAF00007958901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482699
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42420.8788085328538074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14210.2943863567150543No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12280.25440284732307294No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12050.24963797314682648No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8930.18500141910383075No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7760.16076271133770734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7760.16076271133770734No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7160.1483326047909774No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5760.11932902284860752No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5710.11829318063638003No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5180.10731325318676856No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5070.10503440031986808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)