FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552769
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51050.9235322530749734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18370.3323268851907397No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13870.25091855729970386No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8830.15974123006174368No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7680.1389368796007012No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6830.1235597509990611No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6590.11921797351153918No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6010.10872534458336122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)