FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556219
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9040.16252591155641932No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8210.14760373162369497No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7930.14256974321265545No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7670.13789532540240446No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7530.13537833119688467No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6810.1224337895684973No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5950.10697225373459014No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5790.10409568892828183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)