FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556219
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50570.9091742640938192No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18980.3412325001483229No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13390.24073251722792643No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8470.15227814943394596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7630.13717618420082736No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7370.13250176639057637No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6070.10912967733932138No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6050.10877010673853284No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5670.10193826532355062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)