FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487978
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17890.3666148883761153No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12900.26435617999172095No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11430.23423187110894342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9610.19693510773026654No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9250.1895577259630557No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8400.17213890790158573No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7930.1625073261499494No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7830.16045805343683528No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7760.1590235625376554No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6790.13914561722044846No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5720.11721839919012743No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5580.11434941739176765No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5240.10738189016717967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)