FastQCFastQC Report
Sun 21 May 2023
EGAF00007958909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475538
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43870.9225340561637556No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16940.3562281037477552No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12630.2655939167847785No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10670.22437744197098866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9030.1898901875349604No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8390.17643174677943718No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7710.16213215347669374No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7200.1514074584996362No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6670.14026218724896852No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6560.13794901774411297No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5920.12449057698858976No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5410.11376588201153219No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5180.10892925486501603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)