FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535420
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16380.3059280564790258No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13090.24448096821187104No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12800.23906465951962944No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12520.23383512009263757No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11260.21030219267117403No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)