FastQCFastQC Report
Wed 31 May 2023
EGAF00007958913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535420
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26610.49699301482947966No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16570.3094766725187703No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14040.26222404841059355No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12690.23701019760188263No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10630.19853572896044225No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5380.10048186470434425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)