FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522106
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48340.9258656288186691No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22190.425009480833394No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17630.33767089441607645No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14390.2756145303827192No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13940.26699559093364184No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13680.26201575925195264No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12650.24228796451295329No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12440.23826579277005053No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12130.23232830114957498No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10390.19900173527980908No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9870.18904207191643077No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9170.17563483277342148No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9170.17563483277342148No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9130.1748687048223924No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.16375984953247041No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8380.16050380574059675No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7440.14249979889141287No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6870.13158247558924815No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6460.12372966409119987No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6220.11913289638502526No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6190.11855830042175343No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6180.11836676843399617No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6030.11549378861763704No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6000.1149191926543652No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5870.11242927681352063No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5260.10074582556032682No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5240.10036276158481228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)