FastQCFastQC Report
Sun 21 May 2023
EGAF00007958919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501655
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46660.9301212985019585No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45560.9081938782629497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19870.3960889455900968No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15290.30479114132222346No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13250.26412574378806153No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13140.2619330017641606No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12760.254358074772503No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12170.24259700391703462No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10970.21867618183811582No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10870.21668277999820595No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10220.2037256680387916No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9500.18937317479144034No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9060.1806022066958368No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8990.17920682540789984No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8420.16784443492041343No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7500.14950513799324236No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6640.13236188217001724No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6040.12040147113055785No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6030.12020213094656686No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5780.11521862634679213No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5710.11382324505885517No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5690.11342456469087323No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5660.11282654413890024No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5560.11083314229899034No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5470.10903908064307144No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5080.10126481346742283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)