FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506120
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48460.9574804394214811No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45320.8954398166442741No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21060.41610685212992965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16810.3321346716193788No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13010.2570536631628863No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12870.25428752074606814No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12760.25211412313285386No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11860.2343317790247372No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11280.222872046155062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11040.21813008772623094No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10030.19817434600490005No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9610.1898759187544456No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9480.18730735793882874No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8750.1728839010511341No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8250.1630048209910693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8040.1588556073658421No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6920.13672646803129693No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6180.12210542954240101No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6150.12151268473879712No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG6030.11914170552438158No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5990.11835137911957638No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5890.11637556310756343No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5880.11617798150636213No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5730.1132142574883427No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5670.11202876788113492No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5300.10471824863668695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)