FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497528
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18180.36540657008248784No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16720.3360614879966555No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14950.30048560081040665No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG13530.27194449357624095No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12080.24280040520332524No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11140.2239069961891592No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9970.20039073177791No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8720.1752665176633275No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7530.15134826582624494No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7230.14531845443874514No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6180.12421411458249587No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5650.11356144779791288No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG5520.1109485295299963No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC5370.10793362383624641No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5370.10793362383624641No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4980.10009486903249666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)