FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497528
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35150.7064929009020597No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18280.3674165072116544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16000.3215899406666559No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15520.31194224244665625No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC13920.2797832483799907No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11740.2359666189641588No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10430.20963644257207636No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10290.20682253059124311No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9220.1853162033091605No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8520.1712466434049943No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6170.1240131208695792No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6020.1209982151758293No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC5790.11637535977874612No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5760.11577237863999615No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5690.11436542264957952No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5290.10632567413291312No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5170.1039137495779132No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5150.1035117621520799No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4980.10009486903249666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)