FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485092
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43980.9066321440056732No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34390.7089376860471828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16950.34941825468158616No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15390.3172594064631039No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13800.28448211885580466No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC13450.2772669926529401No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11530.2376868717686542No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10780.22222588704823004No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9650.1989313367361243No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7960.16409258449943515No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC5760.1187403626528576No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5750.11853421618991862No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5360.11049450413529804No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5240.10802074658003019No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4980.10266093854361646No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4890.10080562037716556No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4880.10059947391422656No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)