FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457712
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47361.0347117838291329No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15630.34148110602300136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10690.23355297654420246No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8750.19116824553430978No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8680.1896388995700353No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7760.16953892403957074No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6310.1378596147795994No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6270.136985702800014No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5800.12671723703988536No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5120.11186073338693328No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5020.10967595343796972No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4760.10399552557066452No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4750.10377704757576817No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)