FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490912
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17350.35342383156247964No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11490.23405416856788996No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11420.23262825109184537No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9380.19107294178997458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8970.18272113943028487No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8590.17498044456032855No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7100.14462877257023662No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6040.12303630793299003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5900.12018447298090085No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5740.11692523303565609No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5370.10938824066227756No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5270.10735121569649957No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5230.10653640571018838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)