FastQCFastQC Report
Wed 31 May 2023
EGAF00007958937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462479
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47481.026641209654925No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15030.32498772917256785No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10820.23395656883880134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8760.18941400582512938No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8450.18271099876967387No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8240.1781702520546879No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6740.1457363469476452No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5590.12087035303224578No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5280.11416734597679029No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5070.10962659926180432No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4970.1074643389213348No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4920.10638320875110004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)