FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465667
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44010.9450959591295925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40720.8744446138549651No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16560.3556189294066361No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13720.2946311419963193No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12940.27788097503151393No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11660.25039352155080774No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10930.23471708323759252No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9830.21109505290261066No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9470.20336420661116206No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9250.1986398005441657No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9190.19735132616225756No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6860.14731557099815965No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC6580.14130269054925515No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6510.13979947043702903No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6300.13528981010035068No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6260.13443082717907862No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5000.10737286515900847No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4920.10565489931646435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)