FastQCFastQC Report
Sun 21 May 2023
EGAF00007958941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498863
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48250.9671994114616639No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17520.3511986256747845No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14640.2934673447419432No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14020.2810390828744565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13720.27502540777728557No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12040.24134882723312814No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11970.23994563637712157No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11330.22711646283649017No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10320.20687042334268124No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9490.19023258890717493No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9270.18582256050258286No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8050.16136694844075428No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC7120.14272455563952427No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6540.13109811711832708No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6520.13069720544518235No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6490.13009583793546525No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6050.12127578112628115No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5390.10804569591250504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)