FastQCFastQC Report
Sun 21 May 2023
EGAF00007958943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476021
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46360.9739066133636962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39830.8367277914209668No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16780.3525054566920367No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14020.29452482138393055No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13190.2770886158383769No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11960.25124941966846004No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11040.23192254123242462No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10320.21679715810857086No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9540.20041132639106257No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9480.1991508777974081No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8970.188437064751345No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC7240.15209413030097413No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6890.1447415135046563No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6840.1436911396766109No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6140.12898590608397528No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6010.12625493413105723No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5740.12058291545961207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)