FastQCFastQC Report
Sun 21 May 2023
EGAF00007958944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438756
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22030.5021013957643884No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19550.44557795221034013No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18350.41822789887773615No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14850.3384569099909745No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14710.33526607043550405No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14590.3325310651022436No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11160.25435549599321716No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10920.2488854853266964No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10130.23088003354939873No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10040.22882877954945344No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9660.22016792932746218No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9460.21560958710536154No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9040.20603706843895014No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8490.19350162732817328No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8300.18917120221717765No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7710.1757240926619807No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7700.17549617555087565No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7650.17435658999535047No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7630.17390075577314043No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7500.170937833328775No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6570.1497415419960069No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6500.14814612221827167No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6290.14335986288506597No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6190.14108069177401564No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5800.13219192444091935No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5780.13173609021870927No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5550.1264939966632935No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5370.1223914886634029No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5270.12011231755235255No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG4870.11099563310815123No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4740.1080327106637858No Hit
CGGCAGCTTCTCAGTCGGCAGTTTGGACAGGGTTTCGGAACGCT4710.1073489593304707No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4580.10438603688610526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)