FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438756
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43650.9948581899734705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18810.4287120859885677No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18620.424381660877572No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15880.3619323724347929No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15030.3425594179908651No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13490.30746018288068994No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12140.2766913728815104No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12020.2739563675482501No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11580.26392801465962856No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11340.2584580039931078No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10160.23156378488271384No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10100.23019628221608365No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10060.22928461377166354No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9930.2263216913272981No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9390.2140141673276263No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9070.20672081977226522No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8420.19190620755043805No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8320.18962703643938772No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8270.18848745088386257No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8230.18757578243944242No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7300.16637949110667433No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7300.16637949110667433No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6810.1552115526625277No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6460.14723445377385153No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6390.14563903399611627No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6030.1374340179963351No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5970.1360665153297049No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5970.1360665153297049No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5130.11692147799688209No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5030.11464230688583177No Hit
CGTCTGGTCCGCCAGCACAACATTCAGGTGC4880.11122355021925626No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4730.10780479355268077No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4620.10529770533052539No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4540.10347436844168512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)