FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420027
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44341.0556464227299673No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35380.8423268028007724No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17910.42640115992543337No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17670.4206872415344728No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15140.36045301849642997No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13380.3185509502960524No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12600.29998071552543054No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11070.2635544857830568No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11060.26331640585010013No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10700.2547455282636592No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10210.2430796115487814No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9780.23284217443164368No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9140.21760505872241548No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9080.21617657912467533No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8880.2114149804655415No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8740.2080818614041478No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8030.19117818616422277No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7790.1854642677732622No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7550.1797503493823016No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7280.17332219119247097No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7140.1699890721310773No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7060.16808443266742376No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6260.1490380380308885No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6170.14689531863427827No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6060.14427643937175466No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5610.13356284238870358No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5200.12380156513747925No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4940.1176114868806053No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4880.11618300728286515No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4740.11284988822147149No Hit
CGTCTGGTCCGCCAGCACAACATTCAGGTGC4600.10951676916007781No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4480.10665980996459751No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4330.10308861097024714No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4280.1018982113054637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)