FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464115
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC19910.42898850500414765No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG18970.40873490406472535No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16870.3634874977106967No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15470.3333225601413443No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT14320.30854421856651904No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13910.29971020113549446No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13630.29367721362162397No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12770.27514732340045034No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11190.24110403671503833No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11140.24002671751613283No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT9910.21352466522305893No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG9080.19564116652122857No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8440.18185148077523888No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8150.17560302942158731No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7830.1687081865485925No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6950.14974736864785668No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6150.13251026146536957No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5620.12109067795697187No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5270.11354944356463377No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5180.11161026900660395No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4730.10191439621645498No Hit

[OK]Adapter Content

Adapter graph