FastQCFastQC Report
Wed 31 May 2023
EGAF00007958953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464115
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT39950.8607780399254494No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24700.5321956842592892No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22510.48500910334723074No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC18700.40291738039063596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT17800.38352563481033797No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT15960.3438802882906177No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15450.3328916324617821No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC15110.3255658619092251No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12640.2723462934832962No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11710.2523081563836549No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11070.23851847063766524No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10650.22946898936685953No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8180.1762494209409306No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7820.16849272270881138No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7500.16159787983581655No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7400.15944324143800567No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6930.1493164409682945No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6580.14177520657595638No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6420.13832778513945895No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6200.13358758066427504No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5630.12130614179675296No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5500.1185051118795988No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5130.11053294980769852No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA4660.10040614933798735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)