FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480033
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC21230.44226126120495884No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG19710.4105967714719613No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC17850.3718494353513196No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15360.319978001512396No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT14570.30352079961169337No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT14510.3022708855432855No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT14350.29893778136086474No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12730.26519010151385425No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11350.23644207794047495No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11110.23144242166684373No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG10280.2141519437205359No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT10220.21290202965212807No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9150.19061189543218904No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8520.17748779771390716No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT8290.1726964604516773No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8000.1666552091210396No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6300.13124097718281866No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5980.12457476881797709No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5840.1216583026583589No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5250.10936748098568225No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5090.10603437680326143No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT4870.10145135855243285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)