FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480714
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14160.2945618392640947No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12950.26939094763206395No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA12800.26627058916528334No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG10040.20885599337651908No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9700.20178318085181624No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8440.17557216973085868No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8220.1709956439795804No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA7200.14977720640547187No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7110.14790499132540347No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC7090.14748894352983272No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7070.14707289573426197No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6930.14416056116526668No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6400.13313529458264167No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT6220.12939086442250486No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5670.11794955004430908No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5380.11191685700853314No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5320.11066871362182086No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5290.11004464192846475No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5290.11004464192846475No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG5270.109628594132894No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4950.10297182940376191No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4840.10068356652812274No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4830.10047554263033737No Hit

[OK]Adapter Content

Adapter graph