FastQCFastQC Report
Wed 31 May 2023
EGAF00007958958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467562
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA12330.2637083424230369No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG10210.21836676205508576No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9130.1952682211129219No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7540.16126203583695853No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGAC7500.16040653432058208No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG6890.1473601361958414No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6350.13581086572475948No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6180.13217498428015964No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC6090.13025010586831265No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6050.12939460435193623No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5880.12575872290733633No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG5650.12083958918817184No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5630.12041183842998363No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5540.11848696001813663No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT5100.10907644333799582No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC4900.10479893575611364No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4710.10073530355332555No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4700.10052142817423143No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAG4690.10030755279513734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)