FastQCFastQC Report
Sun 21 May 2023
EGAF00007958959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467562
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22130.4733062139352642No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13760.2942925216334946No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT12210.26114183787390766No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11930.2551533272592726No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG10080.2155863821268623No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9580.20489261317215685No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8400.17965531843905194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8160.1745223093407933No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACCCA7220.154418023705947No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7140.15270702067319414No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC7060.15099601764044127No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6850.14650463467946495No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6500.13901899641117116No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT6230.13324436117563018No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT6210.13281661041744197No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5840.12490322139095993No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5260.11249844940350157No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG5050.10800706644252527No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5040.10779319106343115No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC5030.10757931568433705No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4940.10565443727249006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT4900.10479893575611364No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCATC4790.10244630658607842No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4710.10073530355332555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)