FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452387
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11080.24492304155512867No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11010.24337569381967208No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9770.2159655339344411No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7030.15539792257514032No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5910.1306403588078349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)