FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476652
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG23410.4911339929340483No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17280.36252863724478235No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT17070.3581229072782659No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG16170.33924120742176683No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13210.27714139456039205No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10830.22720978827320562No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG9820.2060203251009122No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9720.20392235845019005No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9460.19846764515831258No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8750.1835720819381855No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7620.15986505878502555No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7440.15608871881372574No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7170.15042420885677601No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6970.14622827555533177No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6860.14392051223953745No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6220.13049352567491587No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5970.12524860904811058No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5820.12210165907202739No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5680.11916450576101643No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5350.11224121581363343No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5220.10951385916769467No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5040.10573751919639486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)