FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476652
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38540.808556347188305No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAGAT23100.48463029631680976No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG17560.3684029438668043No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16690.3501506340055219No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16540.34700368402943865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10760.2257412116177001No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10330.21671995501959504No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC9920.20811829175163432No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9870.20706930842627325No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9410.19741866183295148No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7780.16322180542618095No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7560.15860627879459227No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7410.1554593288185091No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7290.15294176883764257No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6890.14454990223475409No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6820.1430813255792486No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6510.13657762896201003No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6470.13573844230172116No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5730.12021348908637748No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5600.11748613244043872No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4950.10384934921074496No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4930.10342975588060052No Hit

[OK]Adapter Content

Adapter graph