FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479136
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG23050.48107426701395845No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17340.3619014225606091No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT17110.357101115340947No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15890.3316386161757831No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12860.26839978628197425No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10620.22164896814265678No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10510.21935316903760102No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG10140.21163093568423164No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9360.19535163293929073No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8700.18157683830895613No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8460.17656782207974353No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7800.16279302744940893No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7360.15360983102918588No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7160.1494356508381754No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7020.14651372470446802No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6330.13211280304548187No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6230.1300257129499766No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6070.12668636879716824No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5570.11625091831964202No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5560.11604220931009149No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5190.10831997595672209No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4940.10310225071795899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)