FastQCFastQC Report
Sun 21 May 2023
EGAF00007958965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479136
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG40100.8369231282976024No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAGAT22390.4672994723836239No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG17590.3671191477993722No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17560.36649302077072066No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15990.33372570627128834No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11080.23124958258198092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10710.2235273492286115No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10430.21768349696119682No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC10190.21267448073198422No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10030.20933513657917588No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7820.16321044546851No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7690.16049722834435318No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7430.15507079409603955No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7420.15486208508648902No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC7210.150479195885928No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6870.14338308956121018No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6570.13712181927469444No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6500.13566085620784077No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6080.12689507780671874No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5520.1152073732718894No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5180.10811126694717156No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG4890.10205870567020638No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4870.10164128765110532No Hit

[OK]Adapter Content

Adapter graph