FastQCFastQC Report
Sun 21 May 2023
EGAF00007958972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473726
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10990.23199064438092906No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9930.20961484064628078No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9440.1992713087312075No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8760.18491701954294254No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8410.17752878246074735No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7710.16275230829635698No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG6930.14628709422746483No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG6830.14417616934683763No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6640.14016541207364594No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6360.13425482240788977No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5320.11230120364936692No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5210.10997918628067702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)