FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477766
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11410.23881984067514223No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9740.20386549063767617No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9190.19235357894869037No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8770.1835626645680103No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8680.1816788972007217No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG7160.14986415944206996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7130.1492362369863071No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG6620.13856155523833844No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6520.13646848038579557No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6380.13353817559223555No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5540.11595634683087537No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5300.11093296718477247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)