FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477766
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25800.5400133119560622No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22570.4724069942189273No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18490.3870095402351779No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9350.19570249871275897No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8980.18795812175835033No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8860.18544643193529886No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8330.17435313521682164No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7160.14986415944206996No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG7000.14651523967800137No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC6670.13960809266460986No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6500.136049865415287No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5430.1136539644930782No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4910.10276997525985525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)