FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519647
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11230.21610824271091722No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8820.1697306055841754No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8350.1606860041528191No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8260.15895405919787856No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7870.1514489643931361No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7630.1468304445132946No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7620.1466380061849679No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7140.13740096642528485No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG6840.13162781657548298No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6820.13124293991882952No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6070.11681006529432479No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5980.11507812033938424No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5870.1129612987277902No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5740.11045960045954273No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5320.10237719066982008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)