FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007958977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519647
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18110.3485058125997071No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11230.21610824271091722No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10030.19301564331170967No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9700.1866651784769276No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9300.17896764534385842No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9090.1749264404489971No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8820.1697306055841754No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8750.1683835372858883No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8340.1604935658244924No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8310.15991625083951222No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA7160.13778584308193834No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6680.1285488033222553No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6100.117387380279305No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5980.11507812033938424No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5980.11507812033938424No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5950.11450080535440404No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5910.11373105204109714No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5690.10949740881790908No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5420.10430157395308738No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5290.1017998756848399No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5200.10006793072989933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)