FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007958978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007958978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503449
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10360.20578052593212023No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8600.1708216721058141No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8230.16347236760823836No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7770.1543353944490902No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7620.1513559466798027No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7240.14380801233094118No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7010.13923952575136705No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6690.13288337051022048No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG6370.12652721526907393No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6360.1263285854177881No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6050.12017106002792735No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5720.11361627493549496No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5690.11302038538163746No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5610.11143134657135081No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5230.10388341222248927No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)